J3_6XIR_022

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGGAG*CUAC*GGAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|2|U|1168
6XIR|1|2|G|1169
6XIR|1|2|G|1170
6XIR|1|2|A|1171
6XIR|1|2|G|1172
*
6XIR|1|2|C|1467
6XIR|1|2|U|1468
6XIR|1|2|A|1469
6XIR|1|2|C|1470
*
6XIR|1|2|G|1574
6XIR|1|2|G|1575
6XIR|1|2|A|1576
6XIR|1|2|A|1577

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AI

40S ribosomal protein S18-A

Chain AJ

40S ribosomal protein S19-A

Chain AX

Transfer RNA; tRNA

Chain v

Rps5p