J3_6XIR_026
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUAAC*GGACUA*UGGAAGUUUGA
- Length
- 22 nucleotides
- Bulged bases
- 6XIR|1|2|A|1337, 6XIR|1|2|U|1390, 6XIR|1|2|G|1409, 6XIR|1|2|U|1413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIR|1|2|U|1334
6XIR|1|2|U|1335
6XIR|1|2|A|1336
6XIR|1|2|A|1337
6XIR|1|2|C|1338
*
6XIR|1|2|G|1386
6XIR|1|2|G|1387
6XIR|1|2|A|1388
6XIR|1|2|C|1389
6XIR|1|2|U|1390
6XIR|1|2|A|1391
*
6XIR|1|2|U|1407
6XIR|1|2|G|1408
6XIR|1|2|G|1409
6XIR|1|2|A|1410
6XIR|1|2|A|1411
6XIR|1|2|G|1412
6XIR|1|2|U|1413
6XIR|1|2|U|1414
6XIR|1|2|U|1415
6XIR|1|2|G|1416
6XIR|1|2|A|1417
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AG
- 40S ribosomal protein S16-A
- Chain AH
- 40S ribosomal protein S17-B
- Chain AK
- RPS20 isoform 1
- Chain AT
- RPS29A isoform 1
- Chain AV
- Guanine nucleotide-binding protein subunit beta-like protein
- Chain v
- Rps5p
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