J3_6XIR_027

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACUG*CGUGCUGGG*CGAG

Length

18 nucleotides

Bulged bases

6XIR|1|2|U|1473, 6XIR|1|2|G|1539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|2|C|1470
6XIR|1|2|A|1471
6XIR|1|2|C|1472
6XIR|1|2|U|1473
6XIR|1|2|G|1474
*
6XIR|1|2|C|1533
6XIR|1|2|G|1534
6XIR|1|2|U|1535
6XIR|1|2|G|1536
6XIR|1|2|C|1537
6XIR|1|2|U|1538
6XIR|1|2|G|1539
6XIR|1|2|G|1540
6XIR|1|2|G|1541
*
6XIR|1|2|C|1571
6XIR|1|2|G|1572
6XIR|1|2|A|1573
6XIR|1|2|G|1574

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AI

40S ribosomal protein S18-A

Chain AJ

40S ribosomal protein S19-A

Chain AP

RPS25A isoform 1

Chain v

Rps5p