J3_6XIR_034

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAUGG*CGUUUCAAAG*CACCAU

Length

22 nucleotides

Bulged bases

6XIR|1|1|C|1556, 6XIR|1|1|A|1558, 6XIR|1|1|A|1580, 6XIR|1|1|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|1|A|1537
6XIR|1|1|G|1538
6XIR|1|1|A|1539
6XIR|1|1|U|1540
6XIR|1|1|G|1541
6XIR|1|1|G|1542
*
6XIR|1|1|C|1551
6XIR|1|1|G|1552
6XIR|1|1|U|1553
6XIR|1|1|U|1554
6XIR|1|1|U|1555
6XIR|1|1|C|1556
6XIR|1|1|A|1557
6XIR|1|1|A|1558
6XIR|1|1|A|1559
6XIR|1|1|G|1560
*
6XIR|1|1|C|1579
6XIR|1|1|A|1580
6XIR|1|1|C|1581
6XIR|1|1|C|1582
6XIR|1|1|A|1583
6XIR|1|1|U|1584

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain A

60S ribosomal protein L2-A

Chain G

RPL8A isoform 1

Chain N

60S ribosomal protein L15-A

Chain X

60S ribosomal protein L25

Chain j

60S ribosomal protein L37-A