J3_6XIR_040

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUCCAGAC*GGGUGG*CUUAGACGUUC

Length

26 nucleotides

Bulged bases

6XIR|1|2|G|1213, 6XIR|1|2|U|1266, 6XIR|1|2|G|1445, 6XIR|1|2|G|1448

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|2|G|1212
6XIR|1|2|G|1213
6XIR|1|2|U|1214
6XIR|1|2|C|1215
6XIR|1|2|C|1216
6XIR|1|2|A|1217
6XIR|1|2|G|1218
6XIR|1|2|A|1219
6XIR|1|2|C|1220
*
6XIR|1|2|G|1263
6XIR|1|2|G|1264
6XIR|1|2|G|1265
6XIR|1|2|U|1266
6XIR|1|2|G|1267
6XIR|1|2|G|1268
*
6XIR|1|2|C|1441
6XIR|1|2|U|1442
6XIR|1|2|U|1443
6XIR|1|2|A|1444
6XIR|1|2|G|1445
6XIR|1|2|A|1446
6XIR|1|2|C|1447
6XIR|1|2|G|1448
6XIR|1|2|U|1449
6XIR|1|2|U|1450
6XIR|1|2|C|1451

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein S10-A

Chain AF

RPS15 isoform 1

Chain AT

RPS29A isoform 1