J3_6XIR_041

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGG*UUGUCUG*CGAUAA

Length

16 nucleotides

Bulged bases

6XIR|1|2|A|1321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|2|U|1293
6XIR|1|2|G|1294
6XIR|1|2|G|1295
*
6XIR|1|2|U|1302
6XIR|1|2|U|1303
6XIR|1|2|G|1304
6XIR|1|2|U|1305
6XIR|1|2|C|1306
6XIR|1|2|U|1307
6XIR|1|2|G|1308
*
6XIR|1|2|C|1317
6XIR|1|2|G|1318
6XIR|1|2|A|1319
6XIR|1|2|U|1320
6XIR|1|2|A|1321
6XIR|1|2|A|1322

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AH

40S ribosomal protein S17-B

Chain AL

40S ribosomal protein S21-A

Chain AQ

RPS26B isoform 1

Chain q

40S ribosomal protein S0-A

Chain s

RPS2 isoform 1