J3_6XIR_042
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AAC*GAUACGU*AAUCUU
- Length
- 16 nucleotides
- Bulged bases
- 6XIR|1|4|U|60, 6XIR|1|4|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIR|1|4|A|43
6XIR|1|4|A|44
6XIR|1|4|C|45
*
6XIR|1|4|G|58
6XIR|1|4|A|59
6XIR|1|4|U|60
6XIR|1|4|A|61
6XIR|1|4|C|62
6XIR|1|4|G|63
6XIR|1|4|U|64
*
6XIR|1|4|A|96
6XIR|1|4|A|97
6XIR|1|4|U|98
6XIR|1|4|C|99
6XIR|1|4|U|100
6XIR|1|4|U|101
Current chains
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
Coloring options: