J3_6XQD_004

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

6XQD|1|1A|G|686, 6XQD|1|1A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XQD_004 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0599

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6XQD|1|1A|C|683
6XQD|1|1A|G|684
6XQD|1|1A|A|685
6XQD|1|1A|G|686
6XQD|1|1A|C|687
6XQD|1|1A|U|688
6XQD|1|1A|A|689
*
6XQD|1|1A|U|773
6XQD|1|1A|A|774
6XQD|1|1A|G|775
*
6XQD|1|1A|C|791
6XQD|1|1A|G|792
6XQD|1|1A|A|793
6XQD|1|1A|G|794

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2