J3_6XQD_019
3D structure
- PDB id
- 6XQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XQD_019 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0828
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
6XQD|1|1a|C|936
6XQD|1|1a|A|937
6XQD|1|1a|A|938
6XQD|1|1a|G|939
*
6XQD|1|1a|C|1344
6XQD|1|1a|U|1345
6XQD|1|1a|A|1346
6XQD|1|1a|G|1347
6XQD|1|1a|U|1348
6XQD|1|1a|A|1349
6XQD|1|1a|A|1350
*
6XQD|1|1a|U|1372
6XQD|1|1a|G|1373
6XQD|1|1a|A|1374
6XQD|1|1a|A|1375
6XQD|1|1a|U|1376
6XQD|1|1a|A|1377
6XQD|1|1a|C|1378
6XQD|1|1a|G|1379
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1g
- 30S ribosomal protein S7
- Chain 1i
- 30S ribosomal protein S9
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