J3_6XQD_033

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

6XQD|1|2A|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XQD_033 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0759

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6XQD|1|2A|C|1298
6XQD|1|2A|G|1299
6XQD|1|2A|U|1300
6XQD|1|2A|A|1301
6XQD|1|2A|A|1302
6XQD|1|2A|G|1303
*
6XQD|1|2A|C|1625
6XQD|1|2A|G|1626
6XQD|1|2A|G|1627
*
6XQD|1|2A|U|1639
6XQD|1|2A|C|1640
6XQD|1|2A|A|1641
6XQD|1|2A|G|1642

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains