3D structure

PDB id
6XQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
UG*CGCCGAUGG*CAG
Length
14 nucleotides
Bulged bases
6XQD|1|2a|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XQD_044 not in the Motif Atlas
Homologous match to J3_6CZR_017
Geometric discrepancy: 0.11
The information below is about J3_6CZR_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.3
Basepair signature
cWW-F-cWW-F-F-tWW-F-cWW-F
Number of instances in this motif group
5

Unit IDs

6XQD|1|2a|U|672
6XQD|1|2a|G|673
*
6XQD|1|2a|C|717
6XQD|1|2a|G|718
6XQD|1|2a|C|719
6XQD|1|2a|C|720
6XQD|1|2a|G|721
6XQD|1|2a|A|722
6XQD|1|2a|U|723
6XQD|1|2a|G|724
6XQD|1|2a|G|725
*
6XQD|1|2a|C|732
6XQD|1|2a|A|733
6XQD|1|2a|G|734

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2
Chain 2f
30S ribosomal protein S6
Chain 2k
30S ribosomal protein S11
Chain 2o
30S ribosomal protein S15
Chain 2r
30S ribosomal protein S18

Coloring options:


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