J3_6XQD_057

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

6XQD|1|1A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XQD_057 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0489

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6XQD|1|1A|C|297
6XQD|1|1A|G|298
6XQD|1|1A|A|299
6XQD|1|1A|A|300
6XQD|1|1A|G|301
*
6XQD|1|1A|C|316
6XQD|1|1A|G|317
6XQD|1|1A|C|318
6XQD|1|1A|C|319
6XQD|1|1A|A|320
6XQD|1|1A|G|321
6XQD|1|1A|A|322
6XQD|1|1A|G|323
6XQD|1|1A|A|324
6XQD|1|1A|G|325
*
6XQD|1|1A|C|337
6XQD|1|1A|G|338
6XQD|1|1A|U|339
6XQD|1|1A|A|340
6XQD|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24