3D structure

PDB id
6XQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GGGACG*CC*GAAAAGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XQD_058 not in the Motif Atlas
Homologous match to J3_9DFE_013
Geometric discrepancy: 0.0402
The information below is about J3_9DFE_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_34864.2
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6XQD|1|1A|G|1424
6XQD|1|1A|G|1425
6XQD|1|1A|G|1426
6XQD|1|1A|A|1427
6XQD|1|1A|C|1428
6XQD|1|1A|G|1429
*
6XQD|1|1A|C|1564
6XQD|1|1A|C|1565
*
6XQD|1|1A|G|1568
6XQD|1|1A|A|1569
6XQD|1|1A|A|1570
6XQD|1|1A|A|1571
6XQD|1|1A|A|1572
6XQD|1|1A|G|1573
6XQD|1|1A|C|1574

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1D
50S ribosomal protein L2

Coloring options:


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