3D structure

PDB id
6XQE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XQE_020 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.0972
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

6XQE|1|1a|C|936
6XQE|1|1a|A|937
6XQE|1|1a|A|938
6XQE|1|1a|G|939
*
6XQE|1|1a|C|1344
6XQE|1|1a|U|1345
6XQE|1|1a|A|1346
6XQE|1|1a|G|1347
6XQE|1|1a|U|1348
6XQE|1|1a|A|1349
6XQE|1|1a|A|1350
*
6XQE|1|1a|U|1372
6XQE|1|1a|G|1373
6XQE|1|1a|A|1374
6XQE|1|1a|A|1375
6XQE|1|1a|U|1376
6XQE|1|1a|A|1377
6XQE|1|1a|C|1378
6XQE|1|1a|G|1379

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1g
30S ribosomal protein S7
Chain 1i
30S ribosomal protein S9

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2381 s