3D structure

PDB id
6XQE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGUCAG*CGCAACC*GACGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XQE_051 not in the Motif Atlas
Homologous match to J3_4LFB_007
Geometric discrepancy: 0.1432
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6XQE|1|2a|C|1063
6XQE|1|2a|G|1064
6XQE|1|2a|U|1065
6XQE|1|2a|C|1066
6XQE|1|2a|A|1067
6XQE|1|2a|G|1068
*
6XQE|1|2a|C|1107
6XQE|1|2a|G|1108
6XQE|1|2a|C|1109
6XQE|1|2a|A|1110
6XQE|1|2a|A|1111
6XQE|1|2a|C|1112
6XQE|1|2a|C|1113
*
6XQE|1|2a|G|1187
6XQE|1|2a|A|1188
6XQE|1|2a|C|1189
6XQE|1|2a|G|1190
6XQE|1|2a|A|1191
6XQE|1|2a|C|1192
6XQE|1|2a|G|1193

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2c
30S ribosomal protein S3
Chain 2e
30S ribosomal protein S5
Chain 2g
30S ribosomal protein S7
Chain 2i
30S ribosomal protein S9
Chain 2j
30S ribosomal protein S10
Chain 2n
30S ribosomal protein S14 type Z

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.6938 s