J3_6XYW_001

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XYW_001 not in the Motif Atlas

Homologous match to J3_5J7L_036

Geometric discrepancy: 0.1683

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

6XYW|1|1|G|33
6XYW|1|1|C|34
*
6XYW|1|1|G|615
6XYW|1|1|U|616
6XYW|1|1|G|617
6XYW|1|1|A|618
6XYW|1|1|A|619
6XYW|1|1|A|620
6XYW|1|1|A|621
6XYW|1|1|G|622
*
6XYW|1|1|C|651
6XYW|1|1|C|652

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Au

50S ribosomal protein L24