J3_6XYW_003

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CGAUCUA*UAG*CAAG

Length

14 nucleotides

Bulged bases

6XYW|1|1|U|829, 6XYW|1|1|A|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XYW_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1916

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6XYW|1|1|C|826
6XYW|1|1|G|827
6XYW|1|1|A|828
6XYW|1|1|U|829
6XYW|1|1|C|830
6XYW|1|1|U|831
6XYW|1|1|A|832
*
6XYW|1|1|U|917
6XYW|1|1|A|918
6XYW|1|1|G|919
*
6XYW|1|1|C|935
6XYW|1|1|A|936
6XYW|1|1|A|937
6XYW|1|1|G|938

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Aa

60S ribosomal protein L2, mitochondrial

Chain Ab

Expressed protein