J3_6XYW_004

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XYW_004 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.1197

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6XYW|1|1|C|841
6XYW|1|1|A|842
6XYW|1|1|G|843
*
6XYW|1|1|C|876
6XYW|1|1|G|877
6XYW|1|1|A|878
6XYW|1|1|A|879
6XYW|1|1|C|880
*
6XYW|1|1|G|904
6XYW|1|1|A|905
6XYW|1|1|U|906
6XYW|1|1|G|907

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ab

Expressed protein