J3_6XYW_010
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- GUG*CUAAC*GGACAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XYW_010 not in the Motif Atlas
- Homologous match to J3_5J7L_044
- Geometric discrepancy: 0.1623
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn 3-way junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
6XYW|1|1|G|2402
6XYW|1|1|U|2403
6XYW|1|1|G|2404
*
6XYW|1|1|C|2492
6XYW|1|1|U|2493
6XYW|1|1|A|2494
6XYW|1|1|A|2495
6XYW|1|1|C|2496
*
6XYW|1|1|G|2525
6XYW|1|1|G|2526
6XYW|1|1|A|2527
6XYW|1|1|C|2528
6XYW|1|1|A|2529
6XYW|1|1|C|2530
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain Ab
- Expressed protein
- Chain Ag
- Ribosomal protein L9/RNase H1
- Chain Ax
- AT4g31460/F3L17_30
Coloring options: