J3_6XYW_011

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CUC*GAG*UAUAAG

Length

12 nucleotides

Bulged bases

6XYW|1|1|U|2632, 6XYW|1|1|A|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XYW_011 not in the Motif Atlas

Geometric match to J3_8VTW_007

Geometric discrepancy: 0.2366

The information below is about J3_8VTW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91491.5

Basepair signature

cWW-F-tWW-tHW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

6XYW|1|1|C|2597
6XYW|1|1|U|2598
6XYW|1|1|C|2599
*
6XYW|1|1|G|2619
6XYW|1|1|A|2620
6XYW|1|1|G|2621
*
6XYW|1|1|U|2630
6XYW|1|1|A|2631
6XYW|1|1|U|2632
6XYW|1|1|A|2633
6XYW|1|1|A|2634
6XYW|1|1|G|2635

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain 3

RNA (118-MER)

Chain Ao

At5g27820

Chain Aw

50S ribosomal protein L27