J3_6XYW_012
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- CAUC*GUU*AUUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 6XYW|1|1|A|2816, 6XYW|1|1|U|2817
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XYW_012 not in the Motif Atlas
- Homologous match to J3_4WF9_009
- Geometric discrepancy: 0.1321
- The information below is about J3_4WF9_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6XYW|1|1|C|2815
6XYW|1|1|A|2816
6XYW|1|1|U|2817
6XYW|1|1|C|2818
*
6XYW|1|1|G|2843
6XYW|1|1|U|2844
6XYW|1|1|U|2845
*
6XYW|1|1|A|2859
6XYW|1|1|U|2860
6XYW|1|1|U|2861
6XYW|1|1|C|2862
6XYW|1|1|A|2863
6XYW|1|1|A|2864
6XYW|1|1|G|2865
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain Ak
- 50S ribosomal protein HLP, mitochondrial
Coloring options: