J3_6XYW_016
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- UG*CGCCAAAAG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 6XYW|1|2|A|718
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XYW_016 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.2199
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6XYW|1|2|U|667
6XYW|1|2|G|668
*
6XYW|1|2|C|712
6XYW|1|2|G|713
6XYW|1|2|C|714
6XYW|1|2|C|715
6XYW|1|2|A|716
6XYW|1|2|A|717
6XYW|1|2|A|718
6XYW|1|2|A|719
6XYW|1|2|G|720
*
6XYW|1|2|C|727
6XYW|1|2|A|728
6XYW|1|2|G|729
Current chains
- Chain 2
- RNA (1743-MER)
Nearby chains
- Chain Ab
- Expressed protein
- Chain Be
- Translation elongation factor EF1B/ribosomal protein S6 family protein
- Chain Bj
- Probable ribosomal protein S11, mitochondrial
- Chain Bn
- At1g15810/F7H2_23
- Chain Bq
- F10K1.8 protein
- Chain Bs
- Ribosomal protein S21 family protein
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