J3_6XYW_018
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUAUG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XYW_018 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.2594
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
6XYW|1|2|C|929
6XYW|1|2|A|930
6XYW|1|2|A|931
6XYW|1|2|G|932
*
6XYW|1|2|C|1693
6XYW|1|2|U|1694
6XYW|1|2|A|1695
6XYW|1|2|G|1696
6XYW|1|2|U|1697
6XYW|1|2|A|1698
6XYW|1|2|A|1699
*
6XYW|1|2|U|1721
6XYW|1|2|G|1722
6XYW|1|2|A|1723
6XYW|1|2|A|1724
6XYW|1|2|U|1725
6XYW|1|2|A|1726
6XYW|1|2|U|1727
6XYW|1|2|G|1728
Current chains
- Chain 2
- RNA (1743-MER)
Nearby chains
- Chain Bf
- Ribosomal protein S7, mitochondrial
- Chain Bh
- 30S ribosomal protein S9, mitochondrial
Coloring options: