J3_6XYW_020

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UUUAAUUC*GCAAAACCUUACC*GGGCCA

Length

27 nucleotides

Bulged bases

6XYW|1|2|A|968, 6XYW|1|2|A|969

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XYW_020 not in the Motif Atlas

Geometric match to J3_6CZR_062

Geometric discrepancy: 0.2702

The information below is about J3_6CZR_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_59791.1

Basepair signature

cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

6XYW|1|2|U|948
6XYW|1|2|U|949
6XYW|1|2|U|950
6XYW|1|2|A|951
6XYW|1|2|A|952
6XYW|1|2|U|953
6XYW|1|2|U|954
6XYW|1|2|C|955
*
6XYW|1|2|G|966
6XYW|1|2|C|967
6XYW|1|2|A|968
6XYW|1|2|A|969
6XYW|1|2|A|970
6XYW|1|2|A|971
6XYW|1|2|C|972
6XYW|1|2|C|973
6XYW|1|2|U|974
6XYW|1|2|U|975
6XYW|1|2|A|976
6XYW|1|2|C|977
6XYW|1|2|C|978
*
6XYW|1|2|G|1570
6XYW|1|2|G|1571
6XYW|1|2|G|1572
6XYW|1|2|C|1573
6XYW|1|2|C|1574
6XYW|1|2|A|1575

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bi

40S ribosomal protein S10, mitochondrial

Chain Bl

Small ribosomal subunit protein S13, mitochondrial

Chain Bm

At2g34520

Chain Br

40S ribosomal protein S19, mitochondrial