J3_6XYW_022
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- CGUCAG*CGAAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XYW_022 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.1664
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6XYW|1|2|C|1055
6XYW|1|2|G|1056
6XYW|1|2|U|1057
6XYW|1|2|C|1058
6XYW|1|2|A|1059
6XYW|1|2|G|1060
*
6XYW|1|2|C|1099
6XYW|1|2|G|1100
6XYW|1|2|A|1101
6XYW|1|2|A|1102
6XYW|1|2|A|1103
6XYW|1|2|C|1104
6XYW|1|2|C|1105
*
6XYW|1|2|G|1537
6XYW|1|2|A|1538
6XYW|1|2|U|1539
6XYW|1|2|G|1540
6XYW|1|2|A|1541
6XYW|1|2|C|1542
6XYW|1|2|G|1543
Current chains
- Chain 2
- RNA (1743-MER)
Nearby chains
- Chain Bb
- Ribosomal protein S3, mitochondrial
- Chain Bd
- At1g64880
- Chain Bh
- 30S ribosomal protein S9, mitochondrial
- Chain Bi
- 40S ribosomal protein S10, mitochondrial
- Chain Bm
- At2g34520
Coloring options: