J3_6XYW_027
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- CCGG*CGAUAGCGUACAAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6XYW|1|1|G|37, 6XYW|1|1|U|589, 6XYW|1|1|A|597
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XYW_027 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.1491
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6XYW|1|1|C|35
6XYW|1|1|C|36
6XYW|1|1|G|37
6XYW|1|1|G|38
*
6XYW|1|1|C|586
6XYW|1|1|G|587
6XYW|1|1|A|588
6XYW|1|1|U|589
6XYW|1|1|A|590
6XYW|1|1|G|591
6XYW|1|1|C|592
6XYW|1|1|G|593
6XYW|1|1|U|594
6XYW|1|1|A|595
6XYW|1|1|C|596
6XYW|1|1|A|597
6XYW|1|1|A|598
6XYW|1|1|G|599
6XYW|1|1|U|600
6XYW|1|1|A|601
6XYW|1|1|C|602
*
6XYW|1|1|G|609
6XYW|1|1|G|610
6XYW|1|1|A|611
6XYW|1|1|A|612
6XYW|1|1|A|613
6XYW|1|1|G|614
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain AG
- At5g40080
- Chain Ad
- 50S ribosomal protein L4
- Chain At
- At4g39880
Coloring options: