J3_6XYW_040
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- GUUUAAUUC*GCAAAACCUUACC*GGGCCAC
- Length
- 29 nucleotides
- Bulged bases
- 6XYW|1|2|A|968, 6XYW|1|2|A|969, 6XYW|1|2|A|971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XYW_040 not in the Motif Atlas
- Homologous match to J3_6CZR_020
- Geometric discrepancy: 0.2404
- The information below is about J3_6CZR_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86907.1
- Basepair signature
- cWW-F-F-F-tSW-F-tSH-tSS-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6XYW|1|2|G|947
6XYW|1|2|U|948
6XYW|1|2|U|949
6XYW|1|2|U|950
6XYW|1|2|A|951
6XYW|1|2|A|952
6XYW|1|2|U|953
6XYW|1|2|U|954
6XYW|1|2|C|955
*
6XYW|1|2|G|966
6XYW|1|2|C|967
6XYW|1|2|A|968
6XYW|1|2|A|969
6XYW|1|2|A|970
6XYW|1|2|A|971
6XYW|1|2|C|972
6XYW|1|2|C|973
6XYW|1|2|U|974
6XYW|1|2|U|975
6XYW|1|2|A|976
6XYW|1|2|C|977
6XYW|1|2|C|978
*
6XYW|1|2|G|1570
6XYW|1|2|G|1571
6XYW|1|2|G|1572
6XYW|1|2|C|1573
6XYW|1|2|C|1574
6XYW|1|2|A|1575
6XYW|1|2|C|1576
Current chains
- Chain 2
- RNA (1743-MER)
Nearby chains
- Chain Bi
- 40S ribosomal protein S10, mitochondrial
- Chain Bl
- Small ribosomal subunit protein S13, mitochondrial
- Chain Bm
- At2g34520
- Chain Br
- 40S ribosomal protein S19, mitochondrial
Coloring options: