J3_6XYW_042

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CGU*GGACUGC*GAGGAAGGUG

Length

20 nucleotides

Bulged bases

6XYW|1|2|U|1533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XYW_042 not in the Motif Atlas

Homologous match to J3_4LFB_018

Geometric discrepancy: 0.1967

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_40706.1

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6XYW|1|2|C|1108
6XYW|1|2|G|1109
6XYW|1|2|U|1110
*
6XYW|1|2|G|1505
6XYW|1|2|G|1506
6XYW|1|2|A|1507
6XYW|1|2|C|1508
6XYW|1|2|U|1509
6XYW|1|2|G|1510
6XYW|1|2|C|1511
*
6XYW|1|2|G|1525
6XYW|1|2|A|1526
6XYW|1|2|G|1527
6XYW|1|2|G|1528
6XYW|1|2|A|1529
6XYW|1|2|A|1530
6XYW|1|2|G|1531
6XYW|1|2|G|1532
6XYW|1|2|U|1533
6XYW|1|2|G|1534

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bh

30S ribosomal protein S9, mitochondrial

Chain Bi

40S ribosomal protein S10, mitochondrial

Chain Bm

At2g34520