3D structure

PDB id
6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GGA*UUUAAAG*CAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XZ7_005 not in the Motif Atlas
Homologous match to J3_5J7L_040
Geometric discrepancy: 0.0966
The information below is about J3_5J7L_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_28621.5
Basepair signature
cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
Number of instances in this motif group
7

Unit IDs

6XZ7|1|A|G|1055
6XZ7|1|A|G|1056
6XZ7|1|A|A|1057
*
6XZ7|1|A|U|1081
6XZ7|1|A|U|1082
6XZ7|1|A|U|1083
6XZ7|1|A|A|1084
6XZ7|1|A|A|1085
6XZ7|1|A|A|1086
6XZ7|1|A|G|1087
*
6XZ7|1|A|C|1102
6XZ7|1|A|A|1103
6XZ7|1|A|C|1104

Current chains

Chain A
23S rRNA

Nearby chains

Chain H
50S ribosomal protein L10
Chain I
50S ribosomal protein L11
Chain e
50S ribosomal protein L36

Coloring options:


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