J3_6XZA_001

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XZA_001 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.0725

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6XZA|1|A1|G|46
6XZA|1|A1|C|47
*
6XZA|1|A1|G|361
6XZA|1|A1|G|362
6XZA|1|A1|A|363
6XZA|1|A1|A|364
6XZA|1|A1|U|365
6XZA|1|A1|A|366
6XZA|1|A1|U|367
*
6XZA|1|A1|A|393
6XZA|1|A1|G|394
6XZA|1|A1|C|395

Current chains

Chain A1

16S rRNA

Nearby chains

Chain L1

30S ribosomal protein S12

Chain P1

30S ribosomal protein S16