J3_6XZA_005
3D structure
- PDB id
- 6XZA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XZA_005 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0676
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
6XZA|1|A1|C|936
6XZA|1|A1|A|937
6XZA|1|A1|A|938
6XZA|1|A1|G|939
*
6XZA|1|A1|C|1344
6XZA|1|A1|U|1345
6XZA|1|A1|A|1346
6XZA|1|A1|G|1347
6XZA|1|A1|U|1348
6XZA|1|A1|A|1349
6XZA|1|A1|A|1350
*
6XZA|1|A1|U|1372
6XZA|1|A1|G|1373
6XZA|1|A1|A|1374
6XZA|1|A1|A|1375
6XZA|1|A1|U|1376
6XZA|1|A1|A|1377
6XZA|1|A1|C|1378
6XZA|1|A1|G|1379
Current chains
- Chain A1
- 16S rRNA
Nearby chains
- Chain G1
- 30S ribosomal protein S7
- Chain I1
- 30S ribosomal protein S9
Coloring options: