J3_6XZA_010

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

6XZA|1|A1|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XZA_010 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1959

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6XZA|1|A1|U|1073
6XZA|1|A1|G|1074
*
6XZA|1|A1|U|1083
6XZA|1|A1|G|1084
6XZA|1|A1|U|1085
6XZA|1|A1|U|1086
6XZA|1|A1|G|1087
*
6XZA|1|A1|C|1098
6XZA|1|A1|G|1099
6XZA|1|A1|C|1100
6XZA|1|A1|A|1101
6XZA|1|A1|A|1102

Current chains

Chain A1

16S rRNA

Nearby chains

Chain B1

30S ribosomal protein S2

Chain E1

30S ribosomal protein S5