J3_6XZA_015

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6XZA|1|A2|U|686, 6XZA|1|A2|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XZA_015 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0479

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6XZA|1|A2|U|683
6XZA|1|A2|G|684
6XZA|1|A2|A|685
6XZA|1|A2|U|686
6XZA|1|A2|C|687
6XZA|1|A2|U|688
6XZA|1|A2|A|689
*
6XZA|1|A2|U|773
6XZA|1|A2|G|774
6XZA|1|A2|G|775
*
6XZA|1|A2|C|791
6XZA|1|A2|A|792
6XZA|1|A2|A|793
6XZA|1|A2|A|794

Current chains

Chain A2

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L2

Chain c2

50S ribosomal protein L34