J3_6XZA_016

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XZA_016 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0466

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6XZA|1|A2|C|698
6XZA|1|A2|A|699
6XZA|1|A2|G|700
*
6XZA|1|A2|C|732
6XZA|1|A2|G|733
6XZA|1|A2|A|734
6XZA|1|A2|A|735
6XZA|1|A2|C|736
*
6XZA|1|A2|G|760
6XZA|1|A2|A|761
6XZA|1|A2|U|762
6XZA|1|A2|G|763

Current chains

Chain A2

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L2