J3_6XZA_019
3D structure
- PDB id
- 6XZA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CAAG*CCCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 6XZA|1|A2|C|1607, 6XZA|1|A2|A|1609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XZA_019 not in the Motif Atlas
- Homologous match to J3_7RQB_008
- Geometric discrepancy: 0.2488
- The information below is about J3_7RQB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16623.1
- Basepair signature
- cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6XZA|1|A2|C|1306
6XZA|1|A2|A|1307
6XZA|1|A2|A|1308
6XZA|1|A2|G|1309
*
6XZA|1|A2|C|1605
6XZA|1|A2|C|1606
6XZA|1|A2|C|1607
6XZA|1|A2|A|1608
6XZA|1|A2|A|1609
6XZA|1|A2|A|1610
6XZA|1|A2|C|1611
*
6XZA|1|A2|G|1620
6XZA|1|A2|U|1621
6XZA|1|A2|G|1622
Current chains
- Chain A2
- 23S rRNA
Nearby chains
- Chain c2
- 50S ribosomal protein L34
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