J3_6XZA_023

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

6XZA|1|A2|A|2518, 6XZA|1|A2|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XZA_023 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0551

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6XZA|1|A2|C|2517
6XZA|1|A2|A|2518
6XZA|1|A2|U|2519
6XZA|1|A2|C|2520
*
6XZA|1|A2|G|2545
6XZA|1|A2|U|2546
6XZA|1|A2|A|2547
*
6XZA|1|A2|U|2561
6XZA|1|A2|U|2562
6XZA|1|A2|U|2563
6XZA|1|A2|A|2564
6XZA|1|A2|A|2565
6XZA|1|A2|A|2566
6XZA|1|A2|G|2567

Current chains

Chain A2

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain K2

50S ribosomal protein L14