J3_6XZB_005
3D structure
- PDB id
- 6XZB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XZB_005 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0675
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
6XZB|1|A1|C|936
6XZB|1|A1|A|937
6XZB|1|A1|A|938
6XZB|1|A1|G|939
*
6XZB|1|A1|C|1344
6XZB|1|A1|U|1345
6XZB|1|A1|A|1346
6XZB|1|A1|G|1347
6XZB|1|A1|U|1348
6XZB|1|A1|A|1349
6XZB|1|A1|A|1350
*
6XZB|1|A1|U|1372
6XZB|1|A1|G|1373
6XZB|1|A1|A|1374
6XZB|1|A1|A|1375
6XZB|1|A1|U|1376
6XZB|1|A1|A|1377
6XZB|1|A1|C|1378
6XZB|1|A1|G|1379
Current chains
- Chain A1
- 16S rRNA
Nearby chains
- Chain G1
- 30S ribosomal protein S7
- Chain I1
- 30S ribosomal protein S9
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