J3_6XZB_013

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XZB_013 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.0487

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6XZB|1|A2|G|30
6XZB|1|A2|C|31
*
6XZB|1|A2|G|474
6XZB|1|A2|C|475
6XZB|1|A2|G|476
6XZB|1|A2|A|477
6XZB|1|A2|A|478
6XZB|1|A2|A|479
6XZB|1|A2|A|480
6XZB|1|A2|G|481
*
6XZB|1|A2|C|509
6XZB|1|A2|C|510

Current chains

Chain A2

23S rRNA

Nearby chains

Chain Q2

50S ribosomal protein L20

Chain U2

50S ribosomal protein L24