J3_6Y0G_006

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

6Y0G|1|L5|A|1805, 6Y0G|1|L5|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Y0G_006 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.4317

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6Y0G|1|L5|U|1726
6Y0G|1|L5|U|1727
*
6Y0G|1|L5|A|1802
6Y0G|1|L5|G|1803
6Y0G|1|L5|A|1804
6Y0G|1|L5|A|1805
6Y0G|1|L5|G|1806
*
6Y0G|1|L5|C|1832
6Y0G|1|L5|G|1833
6Y0G|1|L5|U|1834
6Y0G|1|L5|G|1835
6Y0G|1|L5|G|1836
6Y0G|1|L5|A|1837

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29