J3_6Y0G_012

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Y0G_012 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1459

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6Y0G|1|L5|C|3937
6Y0G|1|L5|G|3938
6Y0G|1|L5|G|3939
*
6Y0G|1|L5|C|4074
6Y0G|1|L5|U|4075
6Y0G|1|L5|G|4076
6Y0G|1|L5|A|4077
6Y0G|1|L5|C|4078
*
6Y0G|1|L5|G|4168
6Y0G|1|L5|G|4169
6Y0G|1|L5|A|4170
6Y0G|1|L5|C|4171
6Y0G|1|L5|A|4172
6Y0G|1|L5|G|4173

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15