J3_6Y2L_011

3D structure

PDB id

6Y2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Y2L_011 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.1389

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6Y2L|1|L5|C|3937
6Y2L|1|L5|G|3938
6Y2L|1|L5|G|3939
*
6Y2L|1|L5|C|4074
6Y2L|1|L5|U|4075
6Y2L|1|L5|G|4076
6Y2L|1|L5|A|4077
6Y2L|1|L5|C|4078
*
6Y2L|1|L5|G|4168
6Y2L|1|L5|G|4169
6Y2L|1|L5|A|4170
6Y2L|1|L5|C|4171
6Y2L|1|L5|A|4172
6Y2L|1|L5|G|4173

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15