J3_6Y2L_017

3D structure

PDB id

6Y2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Y2L_017 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.0912

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

6Y2L|1|S2|A|40
6Y2L|1|S2|G|41
*
6Y2L|1|S2|C|481
6Y2L|1|S2|G|482
6Y2L|1|S2|C|483
6Y2L|1|S2|A|484
6Y2L|1|S2|A|485
6Y2L|1|S2|A|486
6Y2L|1|S2|U|487
*
6Y2L|1|S2|A|512
6Y2L|1|S2|G|513
6Y2L|1|S2|U|514

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23