J3_6Y57_039

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

6Y57|1|L5|U|4882, 6Y57|1|L5|A|4938, 6Y57|1|L5|C|4940, 6Y57|1|L5|A|4943, 6Y57|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y57|1|L5|G|4751
6Y57|1|L5|U|4752
6Y57|1|L5|U|4753
6Y57|1|L5|G|4754
*
6Y57|1|L5|C|4879
6Y57|1|L5|C|4880
6Y57|1|L5|U|4881
6Y57|1|L5|U|4882
6Y57|1|L5|C|4883
*
6Y57|1|L5|G|4936
6Y57|1|L5|C|4937
6Y57|1|L5|A|4938
6Y57|1|L5|C|4939
6Y57|1|L5|C|4940
6Y57|1|L5|G|4941
6Y57|1|L5|C|4942
6Y57|1|L5|A|4943
6Y57|1|L5|C|4944
6Y57|1|L5|G|4945
6Y57|1|L5|U|4946
6Y57|1|L5|U|4947
6Y57|1|L5|C|4948

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a