J3_6Y69_005

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Y69_005 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.2315

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6Y69|1|A|G|1055
6Y69|1|A|G|1056
6Y69|1|A|A|1057
*
6Y69|1|A|U|1081
6Y69|1|A|U|1082
6Y69|1|A|U|1083
6Y69|1|A|A|1084
6Y69|1|A|A|1085
6Y69|1|A|A|1086
6Y69|1|A|G|1087
*
6Y69|1|A|C|1102
6Y69|1|A|A|1103
6Y69|1|A|C|1104

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36