J3_6Y69_007

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6Y69|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Y69_007 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1989

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

6Y69|1|A|C|1306
6Y69|1|A|A|1307
6Y69|1|A|A|1308
6Y69|1|A|G|1309
*
6Y69|1|A|C|1605
6Y69|1|A|C|1606
6Y69|1|A|C|1607
6Y69|1|A|A|1608
6Y69|1|A|A|1609
6Y69|1|A|A|1610
6Y69|1|A|C|1611
*
6Y69|1|A|G|1620
6Y69|1|A|U|1621
6Y69|1|A|G|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34