J3_6Y69_013
3D structure
- PDB id
- 6Y69 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 6Y69|1|A|U|2833, 6Y69|1|A|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Y69_013 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1477
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6Y69|1|A|G|2812
6Y69|1|A|A|2813
6Y69|1|A|A|2814
6Y69|1|A|C|2815
*
6Y69|1|A|G|2831
6Y69|1|A|U|2832
6Y69|1|A|U|2833
6Y69|1|A|G|2834
6Y69|1|A|A|2835
6Y69|1|A|U|2836
*
6Y69|1|A|A|2882
6Y69|1|A|A|2883
6Y69|1|A|U|2884
6Y69|1|A|G|2885
6Y69|1|A|A|2886
6Y69|1|A|A|2887
6Y69|1|A|C|2888
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain D
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
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