J3_6Y6X_011

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Y6X_011 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.123

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6Y6X|1|L5|C|3937
6Y6X|1|L5|G|3938
6Y6X|1|L5|G|3939
*
6Y6X|1|L5|C|4074
6Y6X|1|L5|U|4075
6Y6X|1|L5|G|4076
6Y6X|1|L5|A|4077
6Y6X|1|L5|C|4078
*
6Y6X|1|L5|G|4168
6Y6X|1|L5|G|4169
6Y6X|1|L5|A|4170
6Y6X|1|L5|C|4171
6Y6X|1|L5|A|4172
6Y6X|1|L5|G|4173

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15