3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
Length
28 nucleotides
Bulged bases
6Y6X|1|L5|G|409, 6Y6X|1|L5|G|413
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6Y6X_019 not in the Motif Atlas
Homologous match to J3_8C3A_049
Geometric discrepancy: 0.2949
The information below is about J3_8C3A_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91149.1
Basepair signature
cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
Number of instances in this motif group
6

Unit IDs

6Y6X|1|L5|U|380
6Y6X|1|L5|U|381
6Y6X|1|L5|G|382
6Y6X|1|L5|A|383
6Y6X|1|L5|A|384
6Y6X|1|L5|A|385
6Y6X|1|L5|A|386
6Y6X|1|L5|G|387
6Y6X|1|L5|A|388
6Y6X|1|L5|A|389
6Y6X|1|L5|C|390
*
6Y6X|1|L5|G|401
6Y6X|1|L5|A|402
6Y6X|1|L5|G|403
6Y6X|1|L5|U|404
6Y6X|1|L5|U|405
6Y6X|1|L5|C|406
6Y6X|1|L5|A|407
6Y6X|1|L5|A|408
6Y6X|1|L5|G|409
6Y6X|1|L5|A|410
6Y6X|1|L5|G|411
6Y6X|1|L5|G|412
6Y6X|1|L5|G|413
6Y6X|1|L5|C|414
6Y6X|1|L5|G|415
*
6Y6X|1|L8|C|19
6Y6X|1|L8|A|20

Current chains

Chain L5
28S ribosomal RNA
Chain L8
5.8S ribosomal RNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LP
60S ribosomal protein L17
Chain LY
60S ribosomal protein L26
Chain Ll
60S ribosomal protein L39

Coloring options:


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