J3_6Y7C_001

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AG*CGC(A2M)AAU*AGU

Length

12 nucleotides

Bulged bases

6Y7C|1|2|C|435

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Y7C_001 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1776

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6Y7C|1|2|A|41
6Y7C|1|2|G|42
*
6Y7C|1|2|C|433
6Y7C|1|2|G|434
6Y7C|1|2|C|435
6Y7C|1|2|A2M|436
6Y7C|1|2|A|437
6Y7C|1|2|A|438
6Y7C|1|2|U|439
*
6Y7C|1|2|A|464
6Y7C|1|2|G|465
6Y7C|1|2|U|466

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain X

40S ribosomal protein S23-A

Chain t

Ribosome biogenesis protein TSR1