J3_6Y7C_006
3D structure
- PDB id
- 6Y7C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUUAAUUUG*CGGGGAAACUCAC*GGCCG
- Length
- 27 nucleotides
- Bulged bases
- 6Y7C|1|2|G|1199, 6Y7C|1|2|A|1203, 6Y7C|1|2|C|1457
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Y7C|1|2|C|1180
6Y7C|1|2|U|1181
6Y7C|1|2|U|1182
6Y7C|1|2|A|1183
6Y7C|1|2|A|1184
6Y7C|1|2|U|1185
6Y7C|1|2|U|1186
6Y7C|1|2|U|1187
6Y7C|1|2|G|1188
*
6Y7C|1|2|C|1197
6Y7C|1|2|G|1198
6Y7C|1|2|G|1199
6Y7C|1|2|G|1200
6Y7C|1|2|G|1201
6Y7C|1|2|A|1202
6Y7C|1|2|A|1203
6Y7C|1|2|A|1204
6Y7C|1|2|C|1205
6Y7C|1|2|U|1206
6Y7C|1|2|C|1207
6Y7C|1|2|A|1208
6Y7C|1|2|C|1209
*
6Y7C|1|2|G|1454
6Y7C|1|2|G|1455
6Y7C|1|2|C|1456
6Y7C|1|2|C|1457
6Y7C|1|2|G|1458
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain P
- 40S ribosomal protein S15
- Chain S
- 40S ribosomal protein S18-A
- Chain T
- 40S ribosomal protein S19-A
- Chain d
- 40S ribosomal protein S29-A
- Chain i
- Essential nuclear protein 1
- Chain l
- Serine/threonine-protein kinase RIO2
- Chain t
- Ribosome biogenesis protein TSR1
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